PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022781-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 1068aa    MW: 121459 Da    PI: 6.135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022781-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-14272320147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       r+rWT eE+e l +a++++G+g+Wk I ++ +   +R+  q+k+++++ 
  PSME_00022781-RA 272 RKRWTVEEEEALRRAIHRFGPGNWKEIKEHEPvfRNRSTVQIKDKYRQM 320
                       89********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000850.0028123161No hitNo description
PROSITE profilePS5129413.393269325IPR017930Myb domain
SMARTSM007173.9E-12271323IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-12272322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-12272320IPR009057Homeodomain-like
PfamPF002491.4E-12272320IPR001005SANT/Myb domain
CDDcd116604.74E-17273321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
RTMFAKQVLT DEERRVDPEL GYPRGYAKLC RNAHIQMRGL ITPYTEGPPQ RFLPYMLQPE  60
DMVKMKEFNE LFPIAESEER DPSSARRYAD SLWKQLDHLG NAGFDPAKFR IDPYGNVLYI  120
NADPASPLAW EVDHWFPHSR GGKTVPSNLR LVQWQVNQRK QNKLEFLVPW WDLQLGVSVN  180
QFLSIFASKN SDFRQRAFSL FFFAGENEPL NEVLVADSHS WPSSFRERKS QFGLAPAAIV  240
TVQKQADESL KHLNGNRPIN SAWPIPSGTP SRKRWTVEEE EALRRAIHRF GPGNWKEIKE  300
HEPVFRNRST VQIKDKYRQM KGDWELEKEN RADDLSDKEL ILSRTVQKEN RLKKIREQEI  360
QAKEEEIVQL DKDLKDLQEQ NEAERMALED LESILIKHRR RVEKQRRWSE TQSSYRMCLE  420
KMIRDAMHQS IVYKEQGRLN QAACNALMAR LETQKATCDA SEMELIKKIK QREDLELLLR  480
PCMEHAKKSL HDDTSSCSKQ NIKMELEELP TCHPPDTGCA HFANVAAADV KEEPDTVLKH  540
KESFSPLLVT KEEYSTSLQK ELKLFPKEEK AESKANMCLI APKEQCRAEM EMVQNEPALS  600
VANMGKKVAV TEKSRLSEAE ESDLDVLIVG YEYEGAIARA REAESVGENL TTGTLSDFKQ  660
TKFEGWAKED CASMVGENNG LGKQSRVAKE DRDCKPLEDD QLDKMFGDEL AMQGQAEAVM  720
ADAITGGENN DEDERIKTAG QSNLDKRLQL PLLNPQAGED TEPKNNILTA THDDFTTTHV  780
DESNKLGSRS PHHKKIPSFG GSDEKTDVRH RNARHATESV LTMEANSLEL VEKFHSLHLA  840
CNDEGHVKMQ TKVDGIPKTL NTDTEVSKKR NELAIKENPC KEMENENQAM TTPVAVGNVD  900
EMFEPGLKKI LHPQEEINNF GQVKVQQTVG GIRTKGDSYY MPELKEPERS IKCLQQKEKE  960
CRLQRSESAR VCPNANNATA SFWGVRRSGE ESKGSDMVFG KVVHSGENGE LEEAKRAEDE  1020
DGHSHGHQGV MLLKNGLNAS IKTCTHVWRK AIKRLEGAAI GTDHNSNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1062660.0BT106266.1 Picea glauca clone GQ02906_D15 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-07myb domain protein 3r-4